(pre-print) Petabase-scale Papillomavirus Discovery. Jessica Y.Q. Shen, Anton Korobeynikov, Rayan Chikhi, Artem Babaian. bioRxiv, 2026
(pre-print) Logan: Planetary-Scale Genome Assembly Surveys Life’s Diversity. Rayan Chikhi, Téo Lemane, Raphaël Loll-Krippleber, Mercè Montoliu-Nerin, Brice Raffestin, Antonio Pedro Camargo, Carson J. Miller, Mateus Bernabe Fiamenghi, Daniel Paiva Agustinho, Sina Majidian, Greg Autric, Maxime Hugues, Junkyoung Lee, Roland Faure, Kristen D. Curry, Jorge A. Moura de Sousa, Eduardo P. C. Rocha, David Koslicki, Paul Medvedev, Purav Gupta, Jessica Shen, Alejandro Morales-Tapia, Kate Sihuta, Peter J. Roy, Grant W. Brown, Robert C. Edgar, Anton Korobeynikov, Martin Steinegger, Caleb A. Lareau, Pierre Peterlongo, Artem Babaian. bioRxiv, 2025
History of speciation inferred from genomic analysis of a species complex of north temperate fishes. Eric B Taylor, Armando Geraldes, Jessica Shen. Evolution, qpaf110, 2025
(non-referred) Differential abundance and metagenome functional composition of microbiomes suggests genetic basis for survivability of specific genera on plastic and wood surfaces in the HI-SEAS IV built environment. Jessica Shen, Adrian Chen, Kevin Xiao, Immanuel Abdi. UJEMI, Vol. 28:1-1, 2023
(non-referred) Restoration of O-antigen production in E. coli K-12 DFB1655 confers resistance to T2 bacteriophage-mediated lysis. Jessica Shen, Kevin Xiao, Adrian Chen, Immanuel Abdi. UJEMI, Vol. 27:1-9, 2022